January 08, 2026 – [New Castle, Delaware] Lab Bioreagents announces the upcoming launch of its aptamer-based
platform designed to expand binding reagent options for biomarker assay
development. The platform leverages SELEX (Systematic Evolution of Ligands by
Exponential Enrichment) technology to identify high-affinity nucleic acid aptamer
for biomarker targets.
Antibodies have long been used as detection reagents in
biomarker assays; however, for a subset of biomarkers, generating high-quality
antibodies remains challenging or impractical due to low immunogenicity, small
molecular size, high sequence conservation, or pronounced structural
flexibility. As a result, antibodies developed for these targets often exhibit
low affinity or cross-reactivity, leading to reduced assay sensitivity and
specificity.
Aptamers—short, single-stranded nucleic acids first introduced in the early 1990s—offer an alternative approach. Produced entirely in vitro, aptamers fold into defined three-dimensional structures and recognize target molecules through hydrogen bonding and structural complementarity. Unlike antibodies, aptamer selection does not rely on immune responses, enabling access to targets that are traditionally challenging for antibody development.
1.
Will aptamers fit all biomarker assays?
No. Aptamers are not universal replacements for antibodies.
They are superior to anti-ID antibodies in specific scenarios, including:
a)
Non-immunogenic or weakly immunogenic
biomarkers, where antibody generation is inefficient
b) Small molecules or small proteins with limited binding surfaces
c)
Conformation-specific measurements, such as
detecting pathological protein states while sparing normal forms
2.
Are aptamers stable in bioassays, especially in
blood matrices?
Yes, when properly designed.
a)
Typical biomarker assays run 4–8 hours, during
which aptamers are generally stable.
b)
Aptamers are highly stable in CSF-based assays
and in diluted blood matrices (minimum required dilution ≥3).
c)
Chemical modifications such as 2′-O-methyl or
2′-fluoro substitutions on pyrimidines can significantly enhance nuclease
resistance, making aptamers stable across a wide range of biological matrices.
3.
Which bioanalytical platforms are compatible
with aptamers?
Aptamers are highly versatile and compatible with multiple
detection platforms:
Biotin-conjugated
aptamers
Streptavidin–HRP
Streptavidin–Sulfo-Tag
Fluorescent
dyes
Readout
platforms: SpectraMax, MSD
DNA-labeled
aptamers
Signal
amplification and readout by qPCR
4.
How do aptamers compare with anti-ID antibodies
as binding reagents?
|
Feature |
Aptamers |
Antibodies |
|
Binding origin |
In vitro selection (SELEX) |
In vivo immune response |
|
Target size range |
Small molecules to proteins |
Primarily proteins |
|
Low-immunogenic targets |
Excellent |
Often difficult |
|
Conformation-specific binding |
Strong |
Limited |
|
Batch-to-batch consistency |
Very high (chemical synthesis) |
Variable (biological production) |
|
Lot replacement risk |
Low |
Low to high (mAb vs pAb) |
|
Chemical modification |
Easy and precise |
More complex |
|
Stability (thermal, pH) |
Moderate to high |
High |
|
Sandwich assay compatibility |
Target-dependent |
Well established |
|
Regulatory familiarity |
Growing |
Very high |
5.
What assay sensitivity can aptamers achieve?
In applications where aptamers are well suited, they can
often achieve ~10× higher sensitivity than anti-ID antibodies.
Typical
sensitivity range:
Low
pg/mL to several hundred fg/mL, depending on assay design and signal
amplification strategy.
6.
Do aptamers perform consistently across
different batches?
Yes. Aptamers are chemically synthesized, resulting in
excellent batch-to-batch consistency and minimal lot variability.
7.
What is the timeline for aptamer reagents?
a)
Pre-developed aptamers: shipped within a few
days
b)
Customized aptamers (e.g., signal conjugation,
stability modification): 4–10 weeks
c)
De novo aptamer screening for new biomarkers:
2–4 months